cd-hit-div: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/cd-hit-div - from package: cd-hit

You may install the required package with command apt-get install {package}
Error in other languages:
cd-hit-div: bevel nie gevind nie
cd-hit-div: comandă negăsită
cd-hit-div: comando não encontrado
cd-hit-div: commande introuvable
cd-hit-div: command not found
cd-hit-div: käsku ei ole
cd-hit-div: không tìm thấy lệnh
cd-hit-div: komanda nerasta
cd-hit-div: Kommando nicht gefunden.
cd-hit-div: kommandot finns inte
cd-hit-div: komut yok
cd-hit-div: nie znaleziono polecenia
cd-hit-div: níor aimsíodh an t-ordú
cd-hit-div: no se encontró la orden
cd-hit-div: no s'ha trobat l'ordre
cd-hit-div: opdracht niet gevonden
cd-hit-div: parancs nem található
cd-hit-div: perintah tidak ditemukan
cd-hit-div: príkaz nenájdený
cd-hit-div: příkaz nenalezen
cd-hit-div: команда не найдена
cd-hit-div: командата не е открита
cd-hit-div: 命令找不到
cd-hit-div: コマンドが見つかりません