/usr/bin/cdhit-2d
/usr/bin/cd-hit-2d-para
/usr/bin/cdhit-454
/usr/bin/cdhit
/usr/bin/cd-hit-div
/usr/bin/cdhit-est-2d
/usr/bin/cdhit-est
/usr/bin/cd-hit-para
/usr/bin/clstr2tree
/usr/bin/clstr_merge
/usr/bin/clstr_merge_noorder
/usr/bin/clstr_reduce
/usr/bin/clstr_renumber
/usr/bin/clstr_rev
/usr/bin/clstr_sort_by
/usr/bin/clstr_sort_prot_by
/usr/bin/make_multi_seq
/usr/bin/psi-cd-hit-2d
/usr/bin/psi-cd-hit-2d-g1
/usr/bin/psi-cd-hit
/usr/bin/psi-cd-hit-local
You may install this package on Debian with
apt-get
install cd-hit