bamToGBrowse.pl: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/bamToGBrowse.pl - from package: libbio-samtools-perl

You may install the required package with command apt-get install {package}

Error in other languages:
bamToGBrowse.pl: bevel nie gevind nie
bamToGBrowse.pl: comandă negăsită
bamToGBrowse.pl: comando não encontrado
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bamToGBrowse.pl: käsku ei ole
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bamToGBrowse.pl: komanda nerasta
bamToGBrowse.pl: Kommando nicht gefunden.
bamToGBrowse.pl: kommandot finns inte
bamToGBrowse.pl: komut yok
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bamToGBrowse.pl: níor aimsíodh an t-ordú
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bamToGBrowse.pl: perintah tidak ditemukan
bamToGBrowse.pl: príkaz nenájdený
bamToGBrowse.pl: příkaz nenalezen
bamToGBrowse.pl: команда не найдена
bamToGBrowse.pl: командата не е открита
bamToGBrowse.pl: 命令找不到
bamToGBrowse.pl: コマンドが見つかりません