windowmasker_2.2.22_adapter: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/windowmasker_2.2.22_adapter - from package: ncbi-blast+

You may install the required package with command apt-get install {package}
Error in other languages:
windowmasker_2.2.22_adapter: bevel nie gevind nie
windowmasker_2.2.22_adapter: comandă negăsită
windowmasker_2.2.22_adapter: comando não encontrado
windowmasker_2.2.22_adapter: commande introuvable
windowmasker_2.2.22_adapter: command not found
windowmasker_2.2.22_adapter: käsku ei ole
windowmasker_2.2.22_adapter: không tìm thấy lệnh
windowmasker_2.2.22_adapter: komanda nerasta
windowmasker_2.2.22_adapter: Kommando nicht gefunden.
windowmasker_2.2.22_adapter: kommandot finns inte
windowmasker_2.2.22_adapter: komut yok
windowmasker_2.2.22_adapter: nie znaleziono polecenia
windowmasker_2.2.22_adapter: níor aimsíodh an t-ordú
windowmasker_2.2.22_adapter: no se encontró la orden
windowmasker_2.2.22_adapter: no s'ha trobat l'ordre
windowmasker_2.2.22_adapter: opdracht niet gevonden
windowmasker_2.2.22_adapter: parancs nem található
windowmasker_2.2.22_adapter: perintah tidak ditemukan
windowmasker_2.2.22_adapter: príkaz nenájdený
windowmasker_2.2.22_adapter: příkaz nenalezen
windowmasker_2.2.22_adapter: команда не найдена
windowmasker_2.2.22_adapter: командата не е открита
windowmasker_2.2.22_adapter: 命令找不到
windowmasker_2.2.22_adapter: コマンドが見つかりません