trjorder_d: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/trjorder_d - from package: gromacs

You may install the required package with command apt-get install {package}

Error in other languages:
trjorder_d: bevel nie gevind nie
trjorder_d: comandă negăsită
trjorder_d: comando não encontrado
trjorder_d: commande introuvable
trjorder_d: command not found
trjorder_d: käsku ei ole
trjorder_d: không tìm thấy lệnh
trjorder_d: komanda nerasta
trjorder_d: Kommando nicht gefunden.
trjorder_d: kommandot finns inte
trjorder_d: komut yok
trjorder_d: nie znaleziono polecenia
trjorder_d: níor aimsíodh an t-ordú
trjorder_d: no se encontró la orden
trjorder_d: no s'ha trobat l'ordre
trjorder_d: opdracht niet gevonden
trjorder_d: parancs nem található
trjorder_d: perintah tidak ditemukan
trjorder_d: príkaz nenájdený
trjorder_d: příkaz nenalezen
trjorder_d: команда не найдена
trjorder_d: командата не е открита
trjorder_d: 命令找不到
trjorder_d: コマンドが見つかりません