mipe2snps: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/mipe2snps - from package: mipe

You may install the required package with command apt-get install {package}
Error in other languages:
mipe2snps: bevel nie gevind nie
mipe2snps: comandă negăsită
mipe2snps: comando não encontrado
mipe2snps: commande introuvable
mipe2snps: command not found
mipe2snps: käsku ei ole
mipe2snps: không tìm thấy lệnh
mipe2snps: komanda nerasta
mipe2snps: Kommando nicht gefunden.
mipe2snps: kommandot finns inte
mipe2snps: komut yok
mipe2snps: nie znaleziono polecenia
mipe2snps: níor aimsíodh an t-ordú
mipe2snps: no se encontró la orden
mipe2snps: no s'ha trobat l'ordre
mipe2snps: opdracht niet gevonden
mipe2snps: parancs nem található
mipe2snps: perintah tidak ditemukan
mipe2snps: príkaz nenájdený
mipe2snps: příkaz nenalezen
mipe2snps: команда не найдена
mipe2snps: командата не е открита
mipe2snps: 命令找不到
mipe2snps: コマンドが見つかりません