fastaq_strip_illumina_suffix: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/fastaq_strip_illumina_suffix - from package: fastaq

You may install the required package with command apt-get install {package}
Error in other languages:
fastaq_strip_illumina_suffix: bevel nie gevind nie
fastaq_strip_illumina_suffix: comandă negăsită
fastaq_strip_illumina_suffix: comando não encontrado
fastaq_strip_illumina_suffix: commande introuvable
fastaq_strip_illumina_suffix: command not found
fastaq_strip_illumina_suffix: käsku ei ole
fastaq_strip_illumina_suffix: không tìm thấy lệnh
fastaq_strip_illumina_suffix: komanda nerasta
fastaq_strip_illumina_suffix: Kommando nicht gefunden.
fastaq_strip_illumina_suffix: kommandot finns inte
fastaq_strip_illumina_suffix: komut yok
fastaq_strip_illumina_suffix: nie znaleziono polecenia
fastaq_strip_illumina_suffix: níor aimsíodh an t-ordú
fastaq_strip_illumina_suffix: no se encontró la orden
fastaq_strip_illumina_suffix: no s'ha trobat l'ordre
fastaq_strip_illumina_suffix: opdracht niet gevonden
fastaq_strip_illumina_suffix: parancs nem található
fastaq_strip_illumina_suffix: perintah tidak ditemukan
fastaq_strip_illumina_suffix: príkaz nenájdený
fastaq_strip_illumina_suffix: příkaz nenalezen
fastaq_strip_illumina_suffix: команда не найдена
fastaq_strip_illumina_suffix: командата не е открита
fastaq_strip_illumina_suffix: 命令找不到
fastaq_strip_illumina_suffix: コマンドが見つかりません