cmalign: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/cmalign - from package: infernal

You may install the required package with command apt-get install {package}

Error in other languages:
cmalign: bevel nie gevind nie
cmalign: comandă negăsită
cmalign: comando não encontrado
cmalign: commande introuvable
cmalign: command not found
cmalign: käsku ei ole
cmalign: không tìm thấy lệnh
cmalign: komanda nerasta
cmalign: Kommando nicht gefunden.
cmalign: kommandot finns inte
cmalign: komut yok
cmalign: nie znaleziono polecenia
cmalign: níor aimsíodh an t-ordú
cmalign: no se encontró la orden
cmalign: no s'ha trobat l'ordre
cmalign: opdracht niet gevonden
cmalign: parancs nem található
cmalign: perintah tidak ditemukan
cmalign: príkaz nenájdený
cmalign: příkaz nenalezen
cmalign: команда не найдена
cmalign: командата не е открита
cmalign: 命令找不到
cmalign: コマンドが見つかりません