chime2jmol: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/chime2jmol - from package: jmol-applet

You may install the required package with command apt-get install {package}
Error in other languages:
chime2jmol: bevel nie gevind nie
chime2jmol: comandă negăsită
chime2jmol: comando não encontrado
chime2jmol: commande introuvable
chime2jmol: command not found
chime2jmol: käsku ei ole
chime2jmol: không tìm thấy lệnh
chime2jmol: komanda nerasta
chime2jmol: Kommando nicht gefunden.
chime2jmol: kommandot finns inte
chime2jmol: komut yok
chime2jmol: nie znaleziono polecenia
chime2jmol: níor aimsíodh an t-ordú
chime2jmol: no se encontró la orden
chime2jmol: no s'ha trobat l'ordre
chime2jmol: opdracht niet gevonden
chime2jmol: parancs nem található
chime2jmol: perintah tidak ditemukan
chime2jmol: príkaz nenájdený
chime2jmol: příkaz nenalezen
chime2jmol: команда не найдена
chime2jmol: командата не е открита
chime2jmol: 命令找不到
chime2jmol: コマンドが見つかりません