check_id_map.py: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/lib/qiime/bin/check_id_map.py - from package: qiime

You may install the required package with command apt-get install {package}
Error in other languages:
check_id_map.py: bevel nie gevind nie
check_id_map.py: comandă negăsită
check_id_map.py: comando não encontrado
check_id_map.py: commande introuvable
check_id_map.py: command not found
check_id_map.py: käsku ei ole
check_id_map.py: không tìm thấy lệnh
check_id_map.py: komanda nerasta
check_id_map.py: Kommando nicht gefunden.
check_id_map.py: kommandot finns inte
check_id_map.py: komut yok
check_id_map.py: nie znaleziono polecenia
check_id_map.py: níor aimsíodh an t-ordú
check_id_map.py: no se encontró la orden
check_id_map.py: no s'ha trobat l'ordre
check_id_map.py: opdracht niet gevonden
check_id_map.py: parancs nem található
check_id_map.py: perintah tidak ditemukan
check_id_map.py: príkaz nenájdený
check_id_map.py: příkaz nenalezen
check_id_map.py: команда не найдена
check_id_map.py: командата не е открита
check_id_map.py: 命令找不到
check_id_map.py: コマンドが見つかりません