Package: qiime

/usr/bin/qiime /usr/lib/qiime/bin/add_alpha_to_mapping_file.py /usr/lib/qiime/bin/add_qiime_labels.py /usr/lib/qiime/bin/adjust_seq_orientation.py /usr/lib/qiime/bin/align_seqs.py /usr/lib/qiime/bin/alpha_diversity.py /usr/lib/qiime/bin/alpha_rarefaction.py /usr/lib/qiime/bin/ampliconnoise.py /usr/lib/qiime/bin/assign_taxonomy.py /usr/lib/qiime/bin/beta_diversity.py /usr/lib/qiime/bin/beta_diversity_through_plots.py /usr/lib/qiime/bin/beta_significance.py /usr/lib/qiime/bin/blast_wrapper.py /usr/lib/qiime/bin/categorized_dist_scatterplot.py /usr/lib/qiime/bin/check_id_map.py /usr/lib/qiime/bin/clean_raxml_parsimony_tree.py /usr/lib/qiime/bin/cluster_quality.py /usr/lib/qiime/bin/collate_alpha.py /usr/lib/qiime/bin/compare_3d_plots.py /usr/lib/qiime/bin/compare_alpha_diversity.py /usr/lib/qiime/bin/compare_categories.py /usr/lib/qiime/bin/compare_distance_matrices.py /usr/lib/qiime/bin/compare_taxa_summaries.py /usr/lib/qiime/bin/compute_core_microbiome.py /usr/lib/qiime/bin/conditional_uncovered_probability.py /usr/lib/qiime/bin/consensus_tree.py /usr/lib/qiime/bin/convert_fastaqual_fastq.py /usr/lib/qiime/bin/convert_otu_table_to_unifrac_sample_mapping.py /usr/lib/qiime/bin/convert_unifrac_sample_mapping_to_otu_table.py /usr/lib/qiime/bin/core_diversity_analyses.py /usr/lib/qiime/bin/count_seqs.py /usr/lib/qiime/bin/demultiplex_fasta.py /usr/lib/qiime/bin/denoiser_preprocess.py /usr/lib/qiime/bin/denoiser.py /usr/lib/qiime/bin/denoiser_worker.py /usr/lib/qiime/bin/denoise_wrapper.py /usr/lib/qiime/bin/detrend.py /usr/lib/qiime/bin/dissimilarity_mtx_stats.py /usr/lib/qiime/bin/distance_matrix_from_mapping.py /usr/lib/qiime/bin/estimate_observation_richness.py /usr/lib/qiime/bin/exclude_seqs_by_blast.py /usr/lib/qiime/bin/extract_barcodes.py /usr/lib/qiime/bin/extract_seqs_by_sample_id.py /usr/lib/qiime/bin/FastTree /usr/lib/qiime/bin/filter_alignment.py /usr/lib/qiime/bin/filter_distance_matrix.py /usr/lib/qiime/bin/filter_fasta.py /usr/lib/qiime/bin/filter_otus_by_sample.py /usr/lib/qiime/bin/filter_otus_from_otu_table.py /usr/lib/qiime/bin/filter_samples_from_otu_table.py /usr/lib/qiime/bin/filter_taxa_from_otu_table.py /usr/lib/qiime/bin/filter_tree.py /usr/lib/qiime/bin/fix_arb_fasta.py /usr/lib/qiime/bin/group_significance.py /usr/lib/qiime/bin/identify_chimeric_seqs.py /usr/lib/qiime/bin/identify_missing_files.py /usr/lib/qiime/bin/identify_paired_differences.py /usr/lib/qiime/bin/inflate_denoiser_output.py /usr/lib/qiime/bin/insert_seqs_into_tree.py /usr/lib/qiime/bin/jackknifed_beta_diversity.py /usr/lib/qiime/bin/join_paired_ends.py /usr/lib/qiime/bin/load_remote_mapping_file.py /usr/lib/qiime/bin/make_2d_plots.py /usr/lib/qiime/bin/make_3d_plots.py /usr/lib/qiime/bin/make_bipartite_network.py /usr/lib/qiime/bin/make_bootstrapped_tree.py /usr/lib/qiime/bin/make_distance_boxplots.py /usr/lib/qiime/bin/make_distance_comparison_plots.py /usr/lib/qiime/bin/make_distance_histograms.py /usr/lib/qiime/bin/make_emperor.py /usr/lib/qiime/bin/make_fastq.py /usr/lib/qiime/bin/make_library_id_lists.py /usr/lib/qiime/bin/make_otu_heatmap_html.py /usr/lib/qiime/bin/make_otu_heatmap.py /usr/lib/qiime/bin/make_otu_network.py /usr/lib/qiime/bin/make_otu_table.py /usr/lib/qiime/bin/make_per_library_sff.py /usr/lib/qiime/bin/make_phylogeny.py /usr/lib/qiime/bin/make_prefs_file.py /usr/lib/qiime/bin/make_qiime_py_file.py /usr/lib/qiime/bin/make_rarefaction_plots.py /usr/lib/qiime/bin/make_tep.py /usr/lib/qiime/bin/map_reads_to_reference.py /usr/lib/qiime/bin/merge_mapping_files.py /usr/lib/qiime/bin/merge_otu_maps.py /usr/lib/qiime/bin/merge_otu_tables.py /usr/lib/qiime/bin/multiple_rarefactions_even_depth.py /usr/lib/qiime/bin/multiple_rarefactions.py /usr/lib/qiime/bin/neighbor_joining.py /usr/lib/qiime/bin/nmds.py /usr/lib/qiime/bin/otu_category_significance.py /usr/lib/qiime/bin/parallel_align_seqs_pynast.py /usr/lib/qiime/bin/parallel_alpha_diversity.py /usr/lib/qiime/bin/parallel_assign_taxonomy_blast.py /usr/lib/qiime/bin/parallel_assign_taxonomy_rdp.py /usr/lib/qiime/bin/parallel_assign_taxonomy_uclust.py /usr/lib/qiime/bin/parallel_beta_diversity.py /usr/lib/qiime/bin/parallel_blast.py /usr/lib/qiime/bin/parallel_identify_chimeric_seqs.py /usr/lib/qiime/bin/parallel_map_reads_to_reference.py /usr/lib/qiime/bin/parallel_merge_otu_tables.py /usr/lib/qiime/bin/parallel_multiple_rarefactions.py /usr/lib/qiime/bin/parallel_pick_otus_blast.py /usr/lib/qiime/bin/parallel_pick_otus_trie.py /usr/lib/qiime/bin/parallel_pick_otus_uclust_ref.py /usr/lib/qiime/bin/parallel_pick_otus_usearch61_ref.py /usr/lib/qiime/bin/ParsInsert /usr/lib/qiime/bin/pick_closed_reference_otus.py /usr/lib/qiime/bin/pick_de_novo_otus.py /usr/lib/qiime/bin/pick_open_reference_otus.py /usr/lib/qiime/bin/pick_otus.py /usr/lib/qiime/bin/pick_rep_set.py /usr/lib/qiime/bin/plot_rank_abundance_graph.py /usr/lib/qiime/bin/plot_semivariogram.py /usr/lib/qiime/bin/plot_taxa_summary.py /usr/lib/qiime/bin/poller_example.py /usr/lib/qiime/bin/poller.py /usr/lib/qiime/bin/principal_coordinates.py /usr/lib/qiime/bin/print_metadata_stats.py /usr/lib/qiime/bin/print_qiime_config.py /usr/lib/qiime/bin/process_iseq.py /usr/lib/qiime/bin/process_qseq.py /usr/lib/qiime/bin/process_sff.py /usr/lib/qiime/bin/quality_scores_plot.py /usr/lib/qiime/bin/relatedness.py /usr/lib/qiime/bin/shared_phylotypes.py /usr/lib/qiime/bin/simsam.py /usr/lib/qiime/bin/single_rarefaction.py /usr/lib/qiime/bin/sort_otu_table.py /usr/lib/qiime/bin/split_fasta_on_sample_ids.py /usr/lib/qiime/bin/split_libraries_fastq.py /usr/lib/qiime/bin/split_libraries.py /usr/lib/qiime/bin/split_otu_table_by_taxonomy.py /usr/lib/qiime/bin/split_otu_table.py /usr/lib/qiime/bin/start_parallel_jobs.py /usr/lib/qiime/bin/start_parallel_jobs_sc.py /usr/lib/qiime/bin/start_parallel_jobs_torque.py /usr/lib/qiime/bin/submit_to_mgrast.py /usr/lib/qiime/bin/subsample_fasta.py /usr/lib/qiime/bin/summarize_otu_by_cat.py /usr/lib/qiime/bin/summarize_taxa.py /usr/lib/qiime/bin/summarize_taxa_through_plots.py /usr/lib/qiime/bin/supervised_learning.py /usr/lib/qiime/bin/transform_coordinate_matrices.py /usr/lib/qiime/bin/tree_compare.py /usr/lib/qiime/bin/trflp_file_to_otu_table.py /usr/lib/qiime/bin/trim_sff_primers.py /usr/lib/qiime/bin/truncate_fasta_qual_files.py /usr/lib/qiime/bin/truncate_reverse_primer.py /usr/lib/qiime/bin/uclust /usr/lib/qiime/bin/unweight_fasta.py /usr/lib/qiime/bin/upgma_cluster.py /usr/lib/qiime/bin/usearch61 /usr/lib/qiime/bin/usearch /usr/lib/qiime/bin/validate_demultiplexed_fasta.py /usr/lib/qiime/bin/validate_mapping_file.py /usr/lib/qiime/support_files/denoiser/bin/FlowgramAli_4frame