bp_parse_hmmsearch: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/bp_parse_hmmsearch - from package: bioperl

You may install the required package with command apt-get install {package}

Error in other languages:
bp_parse_hmmsearch: bevel nie gevind nie
bp_parse_hmmsearch: comandă negăsită
bp_parse_hmmsearch: comando não encontrado
bp_parse_hmmsearch: commande introuvable
bp_parse_hmmsearch: command not found
bp_parse_hmmsearch: käsku ei ole
bp_parse_hmmsearch: không tìm thấy lệnh
bp_parse_hmmsearch: komanda nerasta
bp_parse_hmmsearch: Kommando nicht gefunden.
bp_parse_hmmsearch: kommandot finns inte
bp_parse_hmmsearch: komut yok
bp_parse_hmmsearch: nie znaleziono polecenia
bp_parse_hmmsearch: níor aimsíodh an t-ordú
bp_parse_hmmsearch: no se encontró la orden
bp_parse_hmmsearch: no s'ha trobat l'ordre
bp_parse_hmmsearch: opdracht niet gevonden
bp_parse_hmmsearch: parancs nem található
bp_parse_hmmsearch: perintah tidak ditemukan
bp_parse_hmmsearch: príkaz nenájdený
bp_parse_hmmsearch: příkaz nenalezen
bp_parse_hmmsearch: команда не найдена
bp_parse_hmmsearch: командата не е открита
bp_parse_hmmsearch: 命令找不到
bp_parse_hmmsearch: コマンドが見つかりません