align-info: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/align-info - from package: sra-toolkit

You may install the required package with command apt-get install {package}

Error in other languages:
align-info: bevel nie gevind nie
align-info: comandă negăsită
align-info: comando não encontrado
align-info: commande introuvable
align-info: command not found
align-info: käsku ei ole
align-info: không tìm thấy lệnh
align-info: komanda nerasta
align-info: Kommando nicht gefunden.
align-info: kommandot finns inte
align-info: komut yok
align-info: nie znaleziono polecenia
align-info: níor aimsíodh an t-ordú
align-info: no se encontró la orden
align-info: no s'ha trobat l'ordre
align-info: opdracht niet gevonden
align-info: parancs nem található
align-info: perintah tidak ditemukan
align-info: príkaz nenájdený
align-info: příkaz nenalezen
align-info: команда не найдена
align-info: командата не е открита
align-info: 命令找不到
align-info: コマンドが見つかりません