abi-dump: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/abi-dump - from package: sra-toolkit

You may install the required package with command apt-get install {package}
Error in other languages:
abi-dump: bevel nie gevind nie
abi-dump: comandă negăsită
abi-dump: comando não encontrado
abi-dump: commande introuvable
abi-dump: command not found
abi-dump: käsku ei ole
abi-dump: không tìm thấy lệnh
abi-dump: komanda nerasta
abi-dump: Kommando nicht gefunden.
abi-dump: kommandot finns inte
abi-dump: komut yok
abi-dump: nie znaleziono polecenia
abi-dump: níor aimsíodh an t-ordú
abi-dump: no se encontró la orden
abi-dump: no s'ha trobat l'ordre
abi-dump: opdracht niet gevonden
abi-dump: parancs nem található
abi-dump: perintah tidak ditemukan
abi-dump: príkaz nenájdený
abi-dump: příkaz nenalezen
abi-dump: команда не найдена
abi-dump: командата не е открита
abi-dump: 命令找不到
abi-dump: コマンドが見つかりません