relion_particle_sort: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/relion_particle_sort - from package: relion-bin+gui
/usr/bin/relion_particle_sort - from package: relion-bin+mpi+gui
/usr/bin/relion_particle_sort - from package: relion-bin+mpi
/usr/bin/relion_particle_sort - from package: relion-bin

You may install the required package with command apt-get install {package}

Error in other languages:
relion_particle_sort: bevel nie gevind nie
relion_particle_sort: comandă negăsită
relion_particle_sort: comando não encontrado
relion_particle_sort: commande introuvable
relion_particle_sort: command not found
relion_particle_sort: käsku ei ole
relion_particle_sort: không tìm thấy lệnh
relion_particle_sort: komanda nerasta
relion_particle_sort: Kommando nicht gefunden.
relion_particle_sort: kommandot finns inte
relion_particle_sort: komut yok
relion_particle_sort: nie znaleziono polecenia
relion_particle_sort: níor aimsíodh an t-ordú
relion_particle_sort: no se encontró la orden
relion_particle_sort: no s'ha trobat l'ordre
relion_particle_sort: opdracht niet gevonden
relion_particle_sort: parancs nem található
relion_particle_sort: perintah tidak ditemukan
relion_particle_sort: príkaz nenájdený
relion_particle_sort: příkaz nenalezen
relion_particle_sort: команда не найдена
relion_particle_sort: командата не е открита
relion_particle_sort: 命令找不到
relion_particle_sort: コマンドが見つかりません