/usr/bin/bp_bioperl_application_installer.pl
/usr/bin/bp_multi_hmmsearch.pl
/usr/bin/bp_panalysis.pl
/usr/bin/bp_papplmaker.pl
/usr/bin/bp_run_neighbor.pl
/usr/bin/bp_run_protdist.pl
You may install this package on Debian with
apt-get
install bioperl-run