ucsc_genes2gff.pl: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/gmod/chado/bin/ucsc_genes2gff.pl - from package: chado-utils

You may install the required package with command apt-get install {package}

Error in other languages:
ucsc_genes2gff.pl: bevel nie gevind nie
ucsc_genes2gff.pl: comandă negăsită
ucsc_genes2gff.pl: comando não encontrado
ucsc_genes2gff.pl: commande introuvable
ucsc_genes2gff.pl: command not found
ucsc_genes2gff.pl: käsku ei ole
ucsc_genes2gff.pl: không tìm thấy lệnh
ucsc_genes2gff.pl: komanda nerasta
ucsc_genes2gff.pl: Kommando nicht gefunden.
ucsc_genes2gff.pl: kommandot finns inte
ucsc_genes2gff.pl: komut yok
ucsc_genes2gff.pl: nie znaleziono polecenia
ucsc_genes2gff.pl: níor aimsíodh an t-ordú
ucsc_genes2gff.pl: no se encontró la orden
ucsc_genes2gff.pl: no s'ha trobat l'ordre
ucsc_genes2gff.pl: opdracht niet gevonden
ucsc_genes2gff.pl: parancs nem található
ucsc_genes2gff.pl: perintah tidak ditemukan
ucsc_genes2gff.pl: príkaz nenájdený
ucsc_genes2gff.pl: příkaz nenalezen
ucsc_genes2gff.pl: команда не найдена
ucsc_genes2gff.pl: командата не е открита
ucsc_genes2gff.pl: 命令找不到
ucsc_genes2gff.pl: コマンドが見つかりません