relion_find_tiltpairs: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/relion_find_tiltpairs - from package: relion-bin+gui
/usr/bin/relion_find_tiltpairs - from package: relion-bin+mpi+gui
/usr/bin/relion_find_tiltpairs - from package: relion-bin+mpi
/usr/bin/relion_find_tiltpairs - from package: relion-bin

You may install the required package with command apt-get install {package}
Error in other languages:
relion_find_tiltpairs: bevel nie gevind nie
relion_find_tiltpairs: comandă negăsită
relion_find_tiltpairs: comando não encontrado
relion_find_tiltpairs: commande introuvable
relion_find_tiltpairs: command not found
relion_find_tiltpairs: käsku ei ole
relion_find_tiltpairs: không tìm thấy lệnh
relion_find_tiltpairs: komanda nerasta
relion_find_tiltpairs: Kommando nicht gefunden.
relion_find_tiltpairs: kommandot finns inte
relion_find_tiltpairs: komut yok
relion_find_tiltpairs: nie znaleziono polecenia
relion_find_tiltpairs: níor aimsíodh an t-ordú
relion_find_tiltpairs: no se encontró la orden
relion_find_tiltpairs: no s'ha trobat l'ordre
relion_find_tiltpairs: opdracht niet gevonden
relion_find_tiltpairs: parancs nem található
relion_find_tiltpairs: perintah tidak ditemukan
relion_find_tiltpairs: príkaz nenájdený
relion_find_tiltpairs: příkaz nenalezen
relion_find_tiltpairs: команда не найдена
relion_find_tiltpairs: командата не е открита
relion_find_tiltpairs: 命令找不到
relion_find_tiltpairs: コマンドが見つかりません