phenohyper.txt: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/doc/r-cran-qtl/examples/bin/test/phenohyper.txt - from package: r-cran-qtl

You may install the required package with command apt-get install {package}
Error in other languages:
phenohyper.txt: bevel nie gevind nie
phenohyper.txt: comandă negăsită
phenohyper.txt: comando não encontrado
phenohyper.txt: commande introuvable
phenohyper.txt: command not found
phenohyper.txt: käsku ei ole
phenohyper.txt: không tìm thấy lệnh
phenohyper.txt: komanda nerasta
phenohyper.txt: Kommando nicht gefunden.
phenohyper.txt: kommandot finns inte
phenohyper.txt: komut yok
phenohyper.txt: nie znaleziono polecenia
phenohyper.txt: níor aimsíodh an t-ordú
phenohyper.txt: no se encontró la orden
phenohyper.txt: no s'ha trobat l'ordre
phenohyper.txt: opdracht niet gevonden
phenohyper.txt: parancs nem található
phenohyper.txt: perintah tidak ditemukan
phenohyper.txt: príkaz nenájdený
phenohyper.txt: příkaz nenalezen
phenohyper.txt: команда не найдена
phenohyper.txt: командата не е открита
phenohyper.txt: 命令找不到
phenohyper.txt: コマンドが見つかりません