mipe2genotypes: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/mipe2genotypes - from package: mipe

You may install the required package with command apt-get install {package}

Error in other languages:
mipe2genotypes: bevel nie gevind nie
mipe2genotypes: comandă negăsită
mipe2genotypes: comando não encontrado
mipe2genotypes: commande introuvable
mipe2genotypes: command not found
mipe2genotypes: käsku ei ole
mipe2genotypes: không tìm thấy lệnh
mipe2genotypes: komanda nerasta
mipe2genotypes: Kommando nicht gefunden.
mipe2genotypes: kommandot finns inte
mipe2genotypes: komut yok
mipe2genotypes: nie znaleziono polecenia
mipe2genotypes: níor aimsíodh an t-ordú
mipe2genotypes: no se encontró la orden
mipe2genotypes: no s'ha trobat l'ordre
mipe2genotypes: opdracht niet gevonden
mipe2genotypes: parancs nem található
mipe2genotypes: perintah tidak ditemukan
mipe2genotypes: príkaz nenájdený
mipe2genotypes: příkaz nenalezen
mipe2genotypes: команда не найдена
mipe2genotypes: командата не е открита
mipe2genotypes: 命令找不到
mipe2genotypes: コマンドが見つかりません