command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/biomaj/bin/ - from package: biomaj

You may install the required package with command apt-get install {package}
Error in other languages: bevel nie gevind nie comandă negăsită comando não encontrado commande introuvable command not found käsku ei ole không tìm thấy lệnh komanda nerasta Kommando nicht gefunden. kommandot finns inte komut yok nie znaleziono polecenia níor aimsíodh an t-ordú no se encontró la orden no s'ha trobat l'ordre opdracht niet gevonden parancs nem található perintah tidak ditemukan príkaz nenájdený příkaz nenalezen команда не найдена командата не е открита 命令找不到 コマンドが見つかりません