gchem3d-0.14: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/gchem3d-0.14 - from package: gcu-bin

You may install the required package with command apt-get install {package}
Error in other languages:
gchem3d-0.14: bevel nie gevind nie
gchem3d-0.14: comandă negăsită
gchem3d-0.14: comando não encontrado
gchem3d-0.14: commande introuvable
gchem3d-0.14: command not found
gchem3d-0.14: käsku ei ole
gchem3d-0.14: không tìm thấy lệnh
gchem3d-0.14: komanda nerasta
gchem3d-0.14: Kommando nicht gefunden.
gchem3d-0.14: kommandot finns inte
gchem3d-0.14: komut yok
gchem3d-0.14: nie znaleziono polecenia
gchem3d-0.14: níor aimsíodh an t-ordú
gchem3d-0.14: no se encontró la orden
gchem3d-0.14: no s'ha trobat l'ordre
gchem3d-0.14: opdracht niet gevonden
gchem3d-0.14: parancs nem található
gchem3d-0.14: perintah tidak ditemukan
gchem3d-0.14: príkaz nenájdený
gchem3d-0.14: příkaz nenalezen
gchem3d-0.14: команда не найдена
gchem3d-0.14: командата не е открита
gchem3d-0.14: 命令找不到
gchem3d-0.14: コマンドが見つかりません