clean_jumbles: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/lib/fastdnaml/bin/clean_jumbles - from package: fastdnaml

You may install the required package with command apt-get install {package}
Error in other languages:
clean_jumbles: bevel nie gevind nie
clean_jumbles: comandă negăsită
clean_jumbles: comando não encontrado
clean_jumbles: commande introuvable
clean_jumbles: command not found
clean_jumbles: käsku ei ole
clean_jumbles: không tìm thấy lệnh
clean_jumbles: komanda nerasta
clean_jumbles: Kommando nicht gefunden.
clean_jumbles: kommandot finns inte
clean_jumbles: komut yok
clean_jumbles: nie znaleziono polecenia
clean_jumbles: níor aimsíodh an t-ordú
clean_jumbles: no se encontró la orden
clean_jumbles: no s'ha trobat l'ordre
clean_jumbles: opdracht niet gevonden
clean_jumbles: parancs nem található
clean_jumbles: perintah tidak ditemukan
clean_jumbles: príkaz nenájdený
clean_jumbles: příkaz nenalezen
clean_jumbles: команда не найдена
clean_jumbles: командата не е открита
clean_jumbles: 命令找不到
clean_jumbles: コマンドが見つかりません