bp_biogetseq: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/bp_biogetseq - from package: bioperl

You may install the required package with command apt-get install {package}
Error in other languages:
bp_biogetseq: bevel nie gevind nie
bp_biogetseq: comandă negăsită
bp_biogetseq: comando não encontrado
bp_biogetseq: commande introuvable
bp_biogetseq: command not found
bp_biogetseq: käsku ei ole
bp_biogetseq: không tìm thấy lệnh
bp_biogetseq: komanda nerasta
bp_biogetseq: Kommando nicht gefunden.
bp_biogetseq: kommandot finns inte
bp_biogetseq: komut yok
bp_biogetseq: nie znaleziono polecenia
bp_biogetseq: níor aimsíodh an t-ordú
bp_biogetseq: no se encontró la orden
bp_biogetseq: no s'ha trobat l'ordre
bp_biogetseq: opdracht niet gevonden
bp_biogetseq: parancs nem található
bp_biogetseq: perintah tidak ditemukan
bp_biogetseq: príkaz nenájdený
bp_biogetseq: příkaz nenalezen
bp_biogetseq: команда не найдена
bp_biogetseq: командата не е открита
bp_biogetseq: 命令找不到
bp_biogetseq: コマンドが見つかりません