bgeneratereads: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On CentOS possible default full paths are:

/usr/bin/bgeneratereads - from package: bfast

You may install the required package with command yum install {package}
Error in other languages:
bgeneratereads: bevel nie gevind nie
bgeneratereads: comandă negăsită
bgeneratereads: comando não encontrado
bgeneratereads: commande introuvable
bgeneratereads: command not found
bgeneratereads: käsku ei ole
bgeneratereads: không tìm thấy lệnh
bgeneratereads: komanda nerasta
bgeneratereads: Kommando nicht gefunden.
bgeneratereads: kommandot finns inte
bgeneratereads: komut yok
bgeneratereads: nie znaleziono polecenia
bgeneratereads: níor aimsíodh an t-ordú
bgeneratereads: no se encontró la orden
bgeneratereads: no s'ha trobat l'ordre
bgeneratereads: opdracht niet gevonden
bgeneratereads: parancs nem található
bgeneratereads: perintah tidak ditemukan
bgeneratereads: príkaz nenájdený
bgeneratereads: příkaz nenalezen
bgeneratereads: команда не найдена
bgeneratereads: командата не е открита
bgeneratereads: 命令找不到
bgeneratereads: コマンドが見つかりません