OpenSwathMzMLFileCacher: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/OpenSwathMzMLFileCacher - from package: topp

You may install the required package with command apt-get install {package}
Error in other languages:
OpenSwathMzMLFileCacher: bevel nie gevind nie
OpenSwathMzMLFileCacher: comandă negăsită
OpenSwathMzMLFileCacher: comando não encontrado
OpenSwathMzMLFileCacher: commande introuvable
OpenSwathMzMLFileCacher: command not found
OpenSwathMzMLFileCacher: käsku ei ole
OpenSwathMzMLFileCacher: không tìm thấy lệnh
OpenSwathMzMLFileCacher: komanda nerasta
OpenSwathMzMLFileCacher: Kommando nicht gefunden.
OpenSwathMzMLFileCacher: kommandot finns inte
OpenSwathMzMLFileCacher: komut yok
OpenSwathMzMLFileCacher: nie znaleziono polecenia
OpenSwathMzMLFileCacher: níor aimsíodh an t-ordú
OpenSwathMzMLFileCacher: no se encontró la orden
OpenSwathMzMLFileCacher: no s'ha trobat l'ordre
OpenSwathMzMLFileCacher: opdracht niet gevonden
OpenSwathMzMLFileCacher: parancs nem található
OpenSwathMzMLFileCacher: perintah tidak ditemukan
OpenSwathMzMLFileCacher: príkaz nenájdený
OpenSwathMzMLFileCacher: příkaz nenalezen
OpenSwathMzMLFileCacher: команда не найдена
OpenSwathMzMLFileCacher: командата не е открита
OpenSwathMzMLFileCacher: 命令找不到
OpenSwathMzMLFileCacher: コマンドが見つかりません