ITRAQAnalyzer: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/ITRAQAnalyzer - from package: topp

You may install the required package with command apt-get install {package}
Error in other languages:
ITRAQAnalyzer: bevel nie gevind nie
ITRAQAnalyzer: comandă negăsită
ITRAQAnalyzer: comando não encontrado
ITRAQAnalyzer: commande introuvable
ITRAQAnalyzer: command not found
ITRAQAnalyzer: käsku ei ole
ITRAQAnalyzer: không tìm thấy lệnh
ITRAQAnalyzer: komanda nerasta
ITRAQAnalyzer: Kommando nicht gefunden.
ITRAQAnalyzer: kommandot finns inte
ITRAQAnalyzer: komut yok
ITRAQAnalyzer: nie znaleziono polecenia
ITRAQAnalyzer: níor aimsíodh an t-ordú
ITRAQAnalyzer: no se encontró la orden
ITRAQAnalyzer: no s'ha trobat l'ordre
ITRAQAnalyzer: opdracht niet gevonden
ITRAQAnalyzer: parancs nem található
ITRAQAnalyzer: perintah tidak ditemukan
ITRAQAnalyzer: príkaz nenájdený
ITRAQAnalyzer: příkaz nenalezen
ITRAQAnalyzer: команда не найдена
ITRAQAnalyzer: командата не е открита
ITRAQAnalyzer: 命令找不到
ITRAQAnalyzer: コマンドが見つかりません