Configurator.java: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/biomaj/bin/Configurator.java - from package: biomaj

You may install the required package with command apt-get install {package}
Error in other languages:
Configurator.java: bevel nie gevind nie
Configurator.java: comandă negăsită
Configurator.java: comando não encontrado
Configurator.java: commande introuvable
Configurator.java: command not found
Configurator.java: käsku ei ole
Configurator.java: không tìm thấy lệnh
Configurator.java: komanda nerasta
Configurator.java: Kommando nicht gefunden.
Configurator.java: kommandot finns inte
Configurator.java: komut yok
Configurator.java: nie znaleziono polecenia
Configurator.java: níor aimsíodh an t-ordú
Configurator.java: no se encontró la orden
Configurator.java: no s'ha trobat l'ordre
Configurator.java: opdracht niet gevonden
Configurator.java: parancs nem található
Configurator.java: perintah tidak ditemukan
Configurator.java: príkaz nenájdený
Configurator.java: příkaz nenalezen
Configurator.java: команда не найдена
Configurator.java: командата не е открита
Configurator.java: 命令找不到
Configurator.java: コマンドが見つかりません