Configurator.class: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/biomaj/bin/Configurator.class - from package: biomaj

You may install the required package with command apt-get install {package}
Error in other languages:
Configurator.class: bevel nie gevind nie
Configurator.class: comandă negăsită
Configurator.class: comando não encontrado
Configurator.class: commande introuvable
Configurator.class: command not found
Configurator.class: käsku ei ole
Configurator.class: không tìm thấy lệnh
Configurator.class: komanda nerasta
Configurator.class: Kommando nicht gefunden.
Configurator.class: kommandot finns inte
Configurator.class: komut yok
Configurator.class: nie znaleziono polecenia
Configurator.class: níor aimsíodh an t-ordú
Configurator.class: no se encontró la orden
Configurator.class: no s'ha trobat l'ordre
Configurator.class: opdracht niet gevonden
Configurator.class: parancs nem található
Configurator.class: perintah tidak ditemukan
Configurator.class: príkaz nenájdený
Configurator.class: příkaz nenalezen
Configurator.class: команда не найдена
Configurator.class: командата не е открита
Configurator.class: 命令找不到
Configurator.class: コマンドが見つかりません