removeSnpFromMipe: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/removeSnpFromMipe - from package: mipe

You may install the required package with command apt-get install {package}
Error in other languages:
removeSnpFromMipe: bevel nie gevind nie
removeSnpFromMipe: comandă negăsită
removeSnpFromMipe: comando não encontrado
removeSnpFromMipe: commande introuvable
removeSnpFromMipe: command not found
removeSnpFromMipe: käsku ei ole
removeSnpFromMipe: không tìm thấy lệnh
removeSnpFromMipe: komanda nerasta
removeSnpFromMipe: Kommando nicht gefunden.
removeSnpFromMipe: kommandot finns inte
removeSnpFromMipe: komut yok
removeSnpFromMipe: nie znaleziono polecenia
removeSnpFromMipe: níor aimsíodh an t-ordú
removeSnpFromMipe: no se encontró la orden
removeSnpFromMipe: no s'ha trobat l'ordre
removeSnpFromMipe: opdracht niet gevonden
removeSnpFromMipe: parancs nem található
removeSnpFromMipe: perintah tidak ditemukan
removeSnpFromMipe: príkaz nenájdený
removeSnpFromMipe: příkaz nenalezen
removeSnpFromMipe: команда не найдена
removeSnpFromMipe: командата не е открита
removeSnpFromMipe: 命令找不到
removeSnpFromMipe: コマンドが見つかりません