bedToIgv: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On CentOS possible default full paths are:

/usr/bin/bedToIgv - from package: BEDTools

You may install the required package with command yum install {package}

On Debian possible default full paths are:

/usr/bin/bedToIgv - from package: BEDTools

You may install the required package with command apt-get install {package}

Error in other languages:
bedToIgv: bevel nie gevind nie
bedToIgv: comandă negăsită
bedToIgv: comando não encontrado
bedToIgv: commande introuvable
bedToIgv: command not found
bedToIgv: käsku ei ole
bedToIgv: không tìm thấy lệnh
bedToIgv: komanda nerasta
bedToIgv: Kommando nicht gefunden.
bedToIgv: kommandot finns inte
bedToIgv: komut yok
bedToIgv: nie znaleziono polecenia
bedToIgv: níor aimsíodh an t-ordú
bedToIgv: no se encontró la orden
bedToIgv: no s'ha trobat l'ordre
bedToIgv: opdracht niet gevonden
bedToIgv: parancs nem található
bedToIgv: perintah tidak ditemukan
bedToIgv: príkaz nenájdený
bedToIgv: příkaz nenalezen
bedToIgv: команда не найдена
bedToIgv: командата не е открита
bedToIgv: 命令找不到
bedToIgv: コマンドが見つかりません