genotype2mipe: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/genotype2mipe - from package: mipe

You may install the required package with command apt-get install {package}
Error in other languages:
genotype2mipe: bevel nie gevind nie
genotype2mipe: comandă negăsită
genotype2mipe: comando não encontrado
genotype2mipe: commande introuvable
genotype2mipe: command not found
genotype2mipe: käsku ei ole
genotype2mipe: không tìm thấy lệnh
genotype2mipe: komanda nerasta
genotype2mipe: Kommando nicht gefunden.
genotype2mipe: kommandot finns inte
genotype2mipe: komut yok
genotype2mipe: nie znaleziono polecenia
genotype2mipe: níor aimsíodh an t-ordú
genotype2mipe: no se encontró la orden
genotype2mipe: no s'ha trobat l'ordre
genotype2mipe: opdracht niet gevonden
genotype2mipe: parancs nem található
genotype2mipe: perintah tidak ditemukan
genotype2mipe: príkaz nenájdený
genotype2mipe: příkaz nenalezen
genotype2mipe: команда не найдена
genotype2mipe: командата не е открита
genotype2mipe: 命令找不到
genotype2mipe: コマンドが見つかりません