fill-fs: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On CentOS possible default full paths are:

/usr/bin/fill-fs - from package: vcftools

You may install the required package with command yum install {package}

On Debian possible default full paths are:

/usr/bin/fill-fs - from package: vcftools

You may install the required package with command apt-get install {package}
Error in other languages:
fill-fs: bevel nie gevind nie
fill-fs: comandă negăsită
fill-fs: comando não encontrado
fill-fs: commande introuvable
fill-fs: command not found
fill-fs: käsku ei ole
fill-fs: không tìm thấy lệnh
fill-fs: komanda nerasta
fill-fs: Kommando nicht gefunden.
fill-fs: kommandot finns inte
fill-fs: komut yok
fill-fs: nie znaleziono polecenia
fill-fs: níor aimsíodh an t-ordú
fill-fs: no se encontró la orden
fill-fs: no s'ha trobat l'ordre
fill-fs: opdracht niet gevonden
fill-fs: parancs nem található
fill-fs: perintah tidak ditemukan
fill-fs: príkaz nenájdený
fill-fs: příkaz nenalezen
fill-fs: команда не найдена
fill-fs: командата не е открита
fill-fs: 命令找不到
fill-fs: コマンドが見つかりません