eprimer3: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/eprimer3 - from package: emboss

You may install the required package with command apt-get install {package}
Error in other languages:
eprimer3: bevel nie gevind nie
eprimer3: comandă negăsită
eprimer3: comando não encontrado
eprimer3: commande introuvable
eprimer3: command not found
eprimer3: käsku ei ole
eprimer3: không tìm thấy lệnh
eprimer3: komanda nerasta
eprimer3: Kommando nicht gefunden.
eprimer3: kommandot finns inte
eprimer3: komut yok
eprimer3: nie znaleziono polecenia
eprimer3: níor aimsíodh an t-ordú
eprimer3: no se encontró la orden
eprimer3: no s'ha trobat l'ordre
eprimer3: opdracht niet gevonden
eprimer3: parancs nem található
eprimer3: perintah tidak ditemukan
eprimer3: príkaz nenájdený
eprimer3: příkaz nenalezen
eprimer3: команда не найдена
eprimer3: командата не е открита
eprimer3: 命令找不到
eprimer3: コマンドが見つかりません