wincompile.bat: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/doc/r-cran-qtl/examples/bin/wincompile.bat - from package: r-cran-qtl

You may install the required package with command apt-get install {package}
Error in other languages:
wincompile.bat: bevel nie gevind nie
wincompile.bat: comandă negăsită
wincompile.bat: comando não encontrado
wincompile.bat: commande introuvable
wincompile.bat: command not found
wincompile.bat: käsku ei ole
wincompile.bat: không tìm thấy lệnh
wincompile.bat: komanda nerasta
wincompile.bat: Kommando nicht gefunden.
wincompile.bat: kommandot finns inte
wincompile.bat: komut yok
wincompile.bat: nie znaleziono polecenia
wincompile.bat: níor aimsíodh an t-ordú
wincompile.bat: no se encontró la orden
wincompile.bat: no s'ha trobat l'ordre
wincompile.bat: opdracht niet gevonden
wincompile.bat: parancs nem található
wincompile.bat: perintah tidak ditemukan
wincompile.bat: príkaz nenájdený
wincompile.bat: příkaz nenalezen
wincompile.bat: команда не найдена
wincompile.bat: командата не е открита
wincompile.bat: 命令找不到
wincompile.bat: コマンドが見つかりません