Package: hmmer

"hmmer" package binaries on Debian:

/usr/bin/alimask /usr/bin/hmmalign /usr/bin/hmmbuild /usr/bin/hmmc2 /usr/bin/hmmconvert /usr/bin/hmmemit /usr/bin/hmmfetch /usr/bin/hmmlogo /usr/bin/hmmpgmd /usr/bin/hmmpress /usr/bin/hmmscan /usr/bin/hmmsearch /usr/bin/hmmsim /usr/bin/hmmstat /usr/bin/jackhmmer /usr/bin/nhmmer /usr/bin/nhmmscan /usr/bin/phmmer

You may install this package on Debian with apt-get install hmmer