transition: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/lib/fastdnaml/bin/transition - from package: fastdnaml

You may install the required package with command apt-get install {package}
Error in other languages:
transition: bevel nie gevind nie
transition: comandă negăsită
transition: comando não encontrado
transition: commande introuvable
transition: command not found
transition: käsku ei ole
transition: không tìm thấy lệnh
transition: komanda nerasta
transition: Kommando nicht gefunden.
transition: kommandot finns inte
transition: komut yok
transition: nie znaleziono polecenia
transition: níor aimsíodh an t-ordú
transition: no se encontró la orden
transition: no s'ha trobat l'ordre
transition: opdracht niet gevonden
transition: parancs nem található
transition: perintah tidak ditemukan
transition: príkaz nenájdený
transition: příkaz nenalezen
transition: команда не найдена
transition: командата не е открита
transition: 命令找不到
transition: コマンドが見つかりません