srapath.2: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/srapath.2 - from package: sra-toolkit

You may install the required package with command apt-get install {package}
Error in other languages:
srapath.2: bevel nie gevind nie
srapath.2: comandă negăsită
srapath.2: comando não encontrado
srapath.2: commande introuvable
srapath.2: command not found
srapath.2: käsku ei ole
srapath.2: không tìm thấy lệnh
srapath.2: komanda nerasta
srapath.2: Kommando nicht gefunden.
srapath.2: kommandot finns inte
srapath.2: komut yok
srapath.2: nie znaleziono polecenia
srapath.2: níor aimsíodh an t-ordú
srapath.2: no se encontró la orden
srapath.2: no s'ha trobat l'ordre
srapath.2: opdracht niet gevonden
srapath.2: parancs nem található
srapath.2: perintah tidak ditemukan
srapath.2: príkaz nenájdený
srapath.2: příkaz nenalezen
srapath.2: команда не найдена
srapath.2: командата не е открита
srapath.2: 命令找不到
srapath.2: コマンドが見つかりません