sra-sort: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/sra-sort - from package: sra-toolkit

You may install the required package with command apt-get install {package}
Error in other languages:
sra-sort: bevel nie gevind nie
sra-sort: comandă negăsită
sra-sort: comando não encontrado
sra-sort: commande introuvable
sra-sort: command not found
sra-sort: käsku ei ole
sra-sort: không tìm thấy lệnh
sra-sort: komanda nerasta
sra-sort: Kommando nicht gefunden.
sra-sort: kommandot finns inte
sra-sort: komut yok
sra-sort: nie znaleziono polecenia
sra-sort: níor aimsíodh an t-ordú
sra-sort: no se encontró la orden
sra-sort: no s'ha trobat l'ordre
sra-sort: opdracht niet gevonden
sra-sort: parancs nem található
sra-sort: perintah tidak ditemukan
sra-sort: príkaz nenájdený
sra-sort: příkaz nenalezen
sra-sort: команда не найдена
sra-sort: командата не е открита
sra-sort: 命令找不到
sra-sort: コマンドが見つかりません