snpPosOnDesign: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/snpPosOnDesign - from package: mipe

You may install the required package with command apt-get install {package}
Error in other languages:
snpPosOnDesign: bevel nie gevind nie
snpPosOnDesign: comandă negăsită
snpPosOnDesign: comando não encontrado
snpPosOnDesign: commande introuvable
snpPosOnDesign: command not found
snpPosOnDesign: käsku ei ole
snpPosOnDesign: không tìm thấy lệnh
snpPosOnDesign: komanda nerasta
snpPosOnDesign: Kommando nicht gefunden.
snpPosOnDesign: kommandot finns inte
snpPosOnDesign: komut yok
snpPosOnDesign: nie znaleziono polecenia
snpPosOnDesign: níor aimsíodh an t-ordú
snpPosOnDesign: no se encontró la orden
snpPosOnDesign: no s'ha trobat l'ordre
snpPosOnDesign: opdracht niet gevonden
snpPosOnDesign: parancs nem található
snpPosOnDesign: perintah tidak ditemukan
snpPosOnDesign: príkaz nenájdený
snpPosOnDesign: příkaz nenalezen
snpPosOnDesign: команда не найдена
snpPosOnDesign: командата не е открита
snpPosOnDesign: 命令找不到
snpPosOnDesign: コマンドが見つかりません