scram_pileup: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/scram_pileup - from package: staden-io-lib-utils

You may install the required package with command apt-get install {package}
Error in other languages:
scram_pileup: bevel nie gevind nie
scram_pileup: comandă negăsită
scram_pileup: comando não encontrado
scram_pileup: commande introuvable
scram_pileup: command not found
scram_pileup: käsku ei ole
scram_pileup: không tìm thấy lệnh
scram_pileup: komanda nerasta
scram_pileup: Kommando nicht gefunden.
scram_pileup: kommandot finns inte
scram_pileup: komut yok
scram_pileup: nie znaleziono polecenia
scram_pileup: níor aimsíodh an t-ordú
scram_pileup: no se encontró la orden
scram_pileup: no s'ha trobat l'ordre
scram_pileup: opdracht niet gevonden
scram_pileup: parancs nem található
scram_pileup: perintah tidak ditemukan
scram_pileup: príkaz nenájdený
scram_pileup: příkaz nenalezen
scram_pileup: команда не найдена
scram_pileup: командата не е открита
scram_pileup: 命令找不到
scram_pileup: コマンドが見つかりません