phenotypes2.txt: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/doc/r-cran-qtl/examples/bin/test/std/phenotypes2.txt - from package: r-cran-qtl

You may install the required package with command apt-get install {package}
Error in other languages:
phenotypes2.txt: bevel nie gevind nie
phenotypes2.txt: comandă negăsită
phenotypes2.txt: comando não encontrado
phenotypes2.txt: commande introuvable
phenotypes2.txt: command not found
phenotypes2.txt: käsku ei ole
phenotypes2.txt: không tìm thấy lệnh
phenotypes2.txt: komanda nerasta
phenotypes2.txt: Kommando nicht gefunden.
phenotypes2.txt: kommandot finns inte
phenotypes2.txt: komut yok
phenotypes2.txt: nie znaleziono polecenia
phenotypes2.txt: níor aimsíodh an t-ordú
phenotypes2.txt: no se encontró la orden
phenotypes2.txt: no s'ha trobat l'ordre
phenotypes2.txt: opdracht niet gevonden
phenotypes2.txt: parancs nem található
phenotypes2.txt: perintah tidak ditemukan
phenotypes2.txt: príkaz nenájdený
phenotypes2.txt: příkaz nenalezen
phenotypes2.txt: команда не найдена
phenotypes2.txt: командата не е открита
phenotypes2.txt: 命令找不到
phenotypes2.txt: コマンドが見つかりません