mk.pl: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/gmod/chado/modules/bin/mk.pl - from package: libchado-perl
/usr/share/gmod/chado/src/chado/modules/bin/mk.pl - from package: libchado-perl

You may install the required package with command apt-get install {package}
Error in other languages:
mk.pl: bevel nie gevind nie
mk.pl: comandă negăsită
mk.pl: comando não encontrado
mk.pl: commande introuvable
mk.pl: command not found
mk.pl: käsku ei ole
mk.pl: không tìm thấy lệnh
mk.pl: komanda nerasta
mk.pl: Kommando nicht gefunden.
mk.pl: kommandot finns inte
mk.pl: komut yok
mk.pl: nie znaleziono polecenia
mk.pl: níor aimsíodh an t-ordú
mk.pl: no se encontró la orden
mk.pl: no s'ha trobat l'ordre
mk.pl: opdracht niet gevonden
mk.pl: parancs nem található
mk.pl: perintah tidak ditemukan
mk.pl: príkaz nenájdený
mk.pl: příkaz nenalezen
mk.pl: команда не найдена
mk.pl: командата не е открита
mk.pl: 命令找不到
mk.pl: コマンドが見つかりません