make_cvtermpath.pl: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/share/gmod/chado/bin/make_cvtermpath.pl - from package: chado-utils

You may install the required package with command apt-get install {package}
Error in other languages:
make_cvtermpath.pl: bevel nie gevind nie
make_cvtermpath.pl: comandă negăsită
make_cvtermpath.pl: comando não encontrado
make_cvtermpath.pl: commande introuvable
make_cvtermpath.pl: command not found
make_cvtermpath.pl: käsku ei ole
make_cvtermpath.pl: không tìm thấy lệnh
make_cvtermpath.pl: komanda nerasta
make_cvtermpath.pl: Kommando nicht gefunden.
make_cvtermpath.pl: kommandot finns inte
make_cvtermpath.pl: komut yok
make_cvtermpath.pl: nie znaleziono polecenia
make_cvtermpath.pl: níor aimsíodh an t-ordú
make_cvtermpath.pl: no se encontró la orden
make_cvtermpath.pl: no s'ha trobat l'ordre
make_cvtermpath.pl: opdracht niet gevonden
make_cvtermpath.pl: parancs nem található
make_cvtermpath.pl: perintah tidak ditemukan
make_cvtermpath.pl: príkaz nenájdený
make_cvtermpath.pl: příkaz nenalezen
make_cvtermpath.pl: команда не найдена
make_cvtermpath.pl: командата не е открита
make_cvtermpath.pl: 命令找不到
make_cvtermpath.pl: コマンドが見つかりません