gnome-shell-extension-prefs: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/gnome-shell-extension-prefs - from package: gnome-shell

You may install the required package with command apt-get install {package}
Error in other languages:
gnome-shell-extension-prefs: bevel nie gevind nie
gnome-shell-extension-prefs: comandă negăsită
gnome-shell-extension-prefs: comando não encontrado
gnome-shell-extension-prefs: commande introuvable
gnome-shell-extension-prefs: command not found
gnome-shell-extension-prefs: käsku ei ole
gnome-shell-extension-prefs: không tìm thấy lệnh
gnome-shell-extension-prefs: komanda nerasta
gnome-shell-extension-prefs: Kommando nicht gefunden.
gnome-shell-extension-prefs: kommandot finns inte
gnome-shell-extension-prefs: komut yok
gnome-shell-extension-prefs: nie znaleziono polecenia
gnome-shell-extension-prefs: níor aimsíodh an t-ordú
gnome-shell-extension-prefs: no se encontró la orden
gnome-shell-extension-prefs: no s'ha trobat l'ordre
gnome-shell-extension-prefs: opdracht niet gevonden
gnome-shell-extension-prefs: parancs nem található
gnome-shell-extension-prefs: perintah tidak ditemukan
gnome-shell-extension-prefs: príkaz nenájdený
gnome-shell-extension-prefs: příkaz nenalezen
gnome-shell-extension-prefs: команда не найдена
gnome-shell-extension-prefs: командата не е открита
gnome-shell-extension-prefs: 命令找不到
gnome-shell-extension-prefs: コマンドが見つかりません