fix_arb_fasta.py: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/lib/qiime/bin/fix_arb_fasta.py - from package: qiime

You may install the required package with command apt-get install {package}
Error in other languages:
fix_arb_fasta.py: bevel nie gevind nie
fix_arb_fasta.py: comandă negăsită
fix_arb_fasta.py: comando não encontrado
fix_arb_fasta.py: commande introuvable
fix_arb_fasta.py: command not found
fix_arb_fasta.py: käsku ei ole
fix_arb_fasta.py: không tìm thấy lệnh
fix_arb_fasta.py: komanda nerasta
fix_arb_fasta.py: Kommando nicht gefunden.
fix_arb_fasta.py: kommandot finns inte
fix_arb_fasta.py: komut yok
fix_arb_fasta.py: nie znaleziono polecenia
fix_arb_fasta.py: níor aimsíodh an t-ordú
fix_arb_fasta.py: no se encontró la orden
fix_arb_fasta.py: no s'ha trobat l'ordre
fix_arb_fasta.py: opdracht niet gevonden
fix_arb_fasta.py: parancs nem található
fix_arb_fasta.py: perintah tidak ditemukan
fix_arb_fasta.py: príkaz nenájdený
fix_arb_fasta.py: příkaz nenalezen
fix_arb_fasta.py: команда не найдена
fix_arb_fasta.py: командата не е открита
fix_arb_fasta.py: 命令找不到
fix_arb_fasta.py: コマンドが見つかりません