fastq-load.2: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/fastq-load.2 - from package: sra-toolkit

You may install the required package with command apt-get install {package}
Error in other languages:
fastq-load.2: bevel nie gevind nie
fastq-load.2: comandă negăsită
fastq-load.2: comando não encontrado
fastq-load.2: commande introuvable
fastq-load.2: command not found
fastq-load.2: käsku ei ole
fastq-load.2: không tìm thấy lệnh
fastq-load.2: komanda nerasta
fastq-load.2: Kommando nicht gefunden.
fastq-load.2: kommandot finns inte
fastq-load.2: komut yok
fastq-load.2: nie znaleziono polecenia
fastq-load.2: níor aimsíodh an t-ordú
fastq-load.2: no se encontró la orden
fastq-load.2: no s'ha trobat l'ordre
fastq-load.2: opdracht niet gevonden
fastq-load.2: parancs nem található
fastq-load.2: perintah tidak ditemukan
fastq-load.2: príkaz nenájdený
fastq-load.2: příkaz nenalezen
fastq-load.2: команда не найдена
fastq-load.2: командата не е открита
fastq-load.2: 命令找不到
fastq-load.2: コマンドが見つかりません