bp_bioperl_application_installer.pl: command not found

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/bin/bp_bioperl_application_installer.pl - from package: bioperl-run

You may install the required package with command apt-get install {package}

Error in other languages:
bp_bioperl_application_installer.pl: bevel nie gevind nie
bp_bioperl_application_installer.pl: comandă negăsită
bp_bioperl_application_installer.pl: comando não encontrado
bp_bioperl_application_installer.pl: commande introuvable
bp_bioperl_application_installer.pl: command not found
bp_bioperl_application_installer.pl: käsku ei ole
bp_bioperl_application_installer.pl: không tìm thấy lệnh
bp_bioperl_application_installer.pl: komanda nerasta
bp_bioperl_application_installer.pl: Kommando nicht gefunden.
bp_bioperl_application_installer.pl: kommandot finns inte
bp_bioperl_application_installer.pl: komut yok
bp_bioperl_application_installer.pl: nie znaleziono polecenia
bp_bioperl_application_installer.pl: níor aimsíodh an t-ordú
bp_bioperl_application_installer.pl: no se encontró la orden
bp_bioperl_application_installer.pl: no s'ha trobat l'ordre
bp_bioperl_application_installer.pl: opdracht niet gevonden
bp_bioperl_application_installer.pl: parancs nem található
bp_bioperl_application_installer.pl: perintah tidak ditemukan
bp_bioperl_application_installer.pl: príkaz nenájdený
bp_bioperl_application_installer.pl: příkaz nenalezen
bp_bioperl_application_installer.pl: команда не найдена
bp_bioperl_application_installer.pl: командата не е открита
bp_bioperl_application_installer.pl: 命令找不到
bp_bioperl_application_installer.pl: コマンドが見つかりません