bootstrap: command not found

Have You tried accessing the binary with the full path?

Maybe Your $PATH variable doesn't contain the default paths? echo $PATH should give something like:

[root@server ~]# echo $PATH
/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin

If it's empty, You may set the PATH variable with this command

export PATH="/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin"

On Debian possible default full paths are:

/usr/lib/fastdnaml/bin/bootstrap - from package: fastdnaml

You may install the required package with command apt-get install {package}
Error in other languages:
bootstrap: bevel nie gevind nie
bootstrap: comandă negăsită
bootstrap: comando não encontrado
bootstrap: commande introuvable
bootstrap: command not found
bootstrap: käsku ei ole
bootstrap: không tìm thấy lệnh
bootstrap: komanda nerasta
bootstrap: Kommando nicht gefunden.
bootstrap: kommandot finns inte
bootstrap: komut yok
bootstrap: nie znaleziono polecenia
bootstrap: níor aimsíodh an t-ordú
bootstrap: no se encontró la orden
bootstrap: no s'ha trobat l'ordre
bootstrap: opdracht niet gevonden
bootstrap: parancs nem található
bootstrap: perintah tidak ditemukan
bootstrap: príkaz nenájdený
bootstrap: příkaz nenalezen
bootstrap: команда не найдена
bootstrap: командата не е открита
bootstrap: 命令找不到
bootstrap: コマンドが見つかりません